UCD_Gh_Gh_Genomic_308538, UCD_Gh_Gh_Genomic_308538 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_Gh_Genomic_308538
AliasUC_Gh_Gh_Genomic_308538
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i49106Gh
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTTGTAACTTTTAAAGAGTAATTAAACTCGATAATATTCAAAAAAGATGTG
3' Flanking SequenceGATCACTCTTTAACAAAGCTAACCTAAGGCTCTAAAAAGTCAAAAAAAAA
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:94632012..94632112 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:90089758..90089858 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold13514supercontigscaffold13514:2026..2126 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:83620770..83620870 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:100876885..100876985 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:102253985..102254085 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:100864474..100864574 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:98879777..98879877 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:94637862..94637962 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:99712458..99712558 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:96592545..96592645 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:105092640..105092740 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:97526903..97527003 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:102438720..102438820 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:8933673..8933773 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:8889923..8890023 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_02chromosomeB_02:76265916..76266016 -Gossypium anomalum (B1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A42.59SNPi49106GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A37.2i49106GhView
Sequence
>UCD_Gh_Gh_Genomic_308538 ID=UCD_Gh_Gh_Genomic_308538; Name=UCD_Gh_Gh_Genomic_308538; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
TTGTAACTTTTAAAGAGTAATTAAACTCGATAATATTCAAAAAAGATGTG
[A/G]GATCACTCTTTAACAAAGCTAACCTAAGGCTCTAAAAAGTCAAAA
AAAAA