UCD_Gh_Gh_Genomic_099075, UCD_Gh_Gh_Genomic_099075 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_Gh_Genomic_099075
AliasUC_Gh_Gh_Genomic_099075
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i49020Gh
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAAGGATTCACTTATCAACATTACATATACCAAATCATCTTGAGATTTCAA
3' Flanking SequenceGTATCACTTAGGAACACATATACATAGCAATGACTTATAGGTCTTAAGCA
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:83809801..83809901 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:30412799..30412899 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:33294941..33295041 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:63379209..63379309 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:91659358..91659458 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:90235992..90236092 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:87397289..87397389 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:85237824..85237924 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:81930963..81931063 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:85243037..85243137 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:88161106..88161206 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:77026297..77026397 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:84081507..84081607 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:91871910..91872010 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:94890279..94890379 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:98228945..98229045 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DS-28 x SBYF-425, RIL (2022)AD_ch24_Dt.08N/A10.72i49020GhView
Sequence
>UCD_Gh_Gh_Genomic_099075 ID=UCD_Gh_Gh_Genomic_099075; Name=UCD_Gh_Gh_Genomic_099075; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
AAGGATTCACTTATCAACATTACATATACCAAATCATCTTGAGATTTCAA
[C/T]GTATCACTTAGGAACACATATACATAGCAATGACTTATAGGTCTT
AAGCA