DOW_DASCOT_1_9, DOW_DASCOT_1_9 (genetic_marker) Gossypium sp.

Marker Overview
NameDOW_DASCOT_1_9
AliasDASCOT_1_9
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i49501Gh
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTGCTTTTTCTTTGTATTCAATATACGAATAGTGTCTGTATTCCTAAGAAATTACAATGA
3' Flanking SequenceCGAATCCTTTTACTTTATAGCCGA
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:109503406..109503490 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:95742901..95742985 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold42.1supercontigscaffold42.1:881156..881240 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:96407392..96407476 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:114000841..114000925 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:114523286..114523370 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:112294724..112294808 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:109078460..109078544 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:111980677..111980761 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:111976925..111977009 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:110557350..110557434 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:118018071..118018155 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:108190722..108190806 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:115922929..115923013 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:119244231..119244315 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:3676286..3676370 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch01_At.01N/A23.62SNPi49501GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A21.4i49501GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A21.4i49501GhView
Sequence
>DOW_DASCOT_1_9 ID=DOW_DASCOT_1_9; Name=DOW_DASCOT_1_9; organism=Gossypium sp.; type=genetic_marker; length=89bp
CTGCTTTTTCTTTGTATTCAATATACGAATAGTGTCTGTATTCCTAAGAA
ATTACAATGA[A/G]CGAATCCTTTTACTTTATAGCCGA