NAU_TM82252, NAU_TM82252 (genetic_marker) Gossypium hirsutum

Marker Overview

Name

NAU_TM82252

dbSNP ID

N/A

SNP Array ID

NAU_CottonSNP80K:

NAU_TM82252

Type

SNP

SNP Alleles

C/T

5' Flanking Sequence

GGGCTATAAACCTCAAGTTAGTGGTTCAAGTCCTCCCTTATGCACAGGTCAGATTATTTA

3' Flanking Sequence

ATAATTACTCTCACACCCTATATTAATATCTATCCCGTGAGTCTTGTAGGTACCACCAAT

Species

Gossypium hirsutum

Publication

[view all]

Contact

Guo, Wang-Zhen

Contact

Name

Details

Guo, Wang-Zhen

First name:	Wang-Zhen
Last name:	Guo
Institution:	Nanjing Agri Univ
Address:	Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:	China
Email:	moelab@njau.edu.cn
Phone:	+086 25 84395311
Fax:	+086 25 84395307
Keywords:	Cotton Genomics
Last update:	20-Sep-2011

Libraries


Library Name	Type
NAU_CottonSNP80K	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold1451.1	supercontig	scaffold1451.1:99194..99314 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D13	chromosome	D13:60179749..60179869 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D13	chromosome	Ghir_D13:62961530..62961650 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D13	chromosome	D13:64086573..64086693 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D13	chromosome	D13:63557074..63557194 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D13	chromosome	D13:59809787..59809907 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_D13	chromosome	Gbar_D13:59941110..59941230 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D13	chromosome	D13:60895746..60895866 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017635.1	chromosome	CM017635.1:60622565..60622685 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017661.1	chromosome	CM017661.1:64088571..64088691 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017713.1	chromosome	CM017713.1:60423645..60423765 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
CM017693.1	chromosome	CM017693.1:1716940..1717060 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D13	chromosome	D13:64736370..64736490 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2017	Cai C., Zhu G., Zhang T., Guo W. High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis BMC Genomics 2017 18:654

Sequence

>NAU_TM82252 ID=NAU_TM82252; Name=NAU_TM82252; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GGGCTATAAACCTCAAGTTAGTGGTTCAAGTCCTCCCTTATGCACAGGTC
AGATTATTTA[C/T]ATAATTACTCTCACACCCTATATTAATATCTATCC
CGTGAGTCTTGTAGGTACCACCAAT

Search form

NAU_TM82252, NAU_TM82252 (genetic_marker) Gossypium hirsutum