NAU_TM82212, NAU_TM82212 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM82212
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM82212
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAATCGGCTGAAGAACAATGTTCAACCATGGACGGTATTTCACCCTTTTTCAGATGAATTA
3' Flanking SequenceAGTACCAATAGGCACTTGGAGAATCTGTCACACAATGAGTATCTCAAAATCCCATTTGAT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:59564230..59564350 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:57985651..57985770 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:42238820..42238940 +Gossypioides kirkii genome ISU_v3n/a
D10_13chromosomeD10_13:59948910..59949030 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr4chromosomeAt_chr4:37054260..37054380 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:59689261..59689381 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:62455830..62455950 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:63605995..63606115 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:63050856..63050976 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:59301582..59301702 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:59444497..59444617 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:60406149..60406269 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:61248735..61248855 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:63601739..63601859 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:59875187..59875307 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:64216428..64216548 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:57963719..57963838 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:2061992..2062111 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:59362580..59362700 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:44472422..44472542 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:43246145..43246265 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:62253358..62253478 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:32433590..32433710 +Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:114729495..114729615 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:95044306..95044426 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:961919..962039 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>NAU_TM82212 ID=NAU_TM82212; Name=NAU_TM82212; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AATCGGCTGAAGAACAATGTTCAACCATGGACGGTATTTCACCCTTTTTC
AGATGAATTA[C/T]AGTACCAATAGGCACTTGGAGAATCTGTCACACAA
TGAGTATCTCAAAATCCCATTTGAT