NAU_TM80560, NAU_TM80560 (genetic_marker) Gossypium hirsutum

Marker Overview

Name

NAU_TM80560

dbSNP ID

N/A

SNP Array ID

NAU_CottonSNP80K:

NAU_TM80560

Type

SNP

SNP Alleles

C/A

5' Flanking Sequence

CTGTTGCAACTGCTCATGCTGGGACTAAAGACACCATTGTTCGTTCAAAAACTAGAGCAC

3' Flanking Sequence

TGCTCAAACTTACGCTATTTGAGCTAGAGAGGAAGTTGTTACTCCTGATGTGATTGTTGG

Species

Gossypium hirsutum

Publication

[view all]

Contact

Guo, Wang-Zhen

Contact

Name

Details

Guo, Wang-Zhen

First name:	Wang-Zhen
Last name:	Guo
Institution:	Nanjing Agri Univ
Address:	Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:	China
Email:	moelab@njau.edu.cn
Phone:	+086 25 84395311
Fax:	+086 25 84395307
Keywords:	Cotton Genomics
Last update:	20-Sep-2011

Libraries


Library Name	Type
NAU_CottonSNP80K	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018227.1	chromosome	CM018227.1:11720812..11720931 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Dt_chr13	chromosome	Dt_chr13:48086813..48086933 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D13	chromosome	D13:12034600..12034720 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D13	chromosome	Ghir_D13:12009768..12009888 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D13	chromosome	D13:11737304..11737424 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D13	chromosome	D13:12232360..12232480 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D13	chromosome	D13:11908346..11908466 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_D13	chromosome	Gbar_D13:11912339..11912458 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D13	chromosome	D13:11318178..11318297 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017635.1	chromosome	CM017635.1:11758349..11758469 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017713.1	chromosome	CM017713.1:11911914..11912033 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D13	chromosome	D13:12402929..12403049 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2017	Cai C., Zhu G., Zhang T., Guo W. High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis BMC Genomics 2017 18:654

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	LMY28 x XLZ24, RIL (2018)	AD_ch18_Dt.13	N/A	39.16	TM80560	View

Sequence

>NAU_TM80560 ID=NAU_TM80560; Name=NAU_TM80560; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CTGTTGCAACTGCTCATGCTGGGACTAAAGACACCATTGTTCGTTCAAAA
ACTAGAGCAC[A/C]TGCTCAAACTTACGCTATTTGAGCTAGAGAGGAAG
TTGTTACTCCTGATGTGATTGTTGG

Search form

NAU_TM80560, NAU_TM80560 (genetic_marker) Gossypium hirsutum