NAU_TM80469, NAU_TM80469 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM80469
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM80469
TypeSNP
SNP AllelesC/T
5' Flanking SequenceTGAGAATTAGTAAGATGTAATAAGCAAGAATACACCTAAGACTCGTACTACATTACAACA
3' Flanking SequenceAAGTAACAAATAACAAGTGCGCCAATAGGTTAAGTTACCGAAAACCTGAAAATGACCATT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:8410893..8411013 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:8090543..8090663 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:8380997..8381117 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:51584575..51584695 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:8561724..8561844 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:8563440..8563560 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:8347353..8347473 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:8786577..8786697 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:8457509..8457629 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:8166981..8167101 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:8086898..8087018 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:8362705..8362825 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:8866594..8866714 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:8391687..8391807 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:8955022..8955142 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:8004549..8004669 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:8608722..8608842 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:7196334..7196454 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:7587065..7587185 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:8945107..8945227 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:7621149..7621269 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:7654136..7654255 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch18_Dt.13N/A36.4TM80469View
Sequence
>NAU_TM80469 ID=NAU_TM80469; Name=NAU_TM80469; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TGAGAATTAGTAAGATGTAATAAGCAAGAATACACCTAAGACTCGTACTA
CATTACAACA[C/T]AAGTAACAAATAACAAGTGCGCCAATAGGTTAAGT
TACCGAAAACCTGAAAATGACCATT