NAU_TM80379, NAU_TM80379 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM80379
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM80379
TypeSNP
SNP AllelesG/T
5' Flanking SequenceATATCATAAACCCAATTCTCCAACTTAAGAGATCACTGCCAACTCAACACATCAACAAAA
3' Flanking SequenceGACAAACACTTTTTAAGCATCACTTGCTAAGTTGATTGTTATTAAAGTTGCAAAGGTGTT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:5500339..5500459 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:5210156..5210276 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:5278350..5278470 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:52911397..52911517 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:5612234..5612354 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:5628135..5628255 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:5558034..5558154 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:5846730..5846850 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:5502346..5502466 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:5249811..5249931 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:5248452..5248572 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:5537007..5537127 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:5914722..5914842 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:5494890..5495010 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:5990671..5990791 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:5222928..5223048 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:5579111..5579231 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:4970192..4970312 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr13chromosomeChr13:5825450..5825570 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:5443647..5443767 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch18_Dt.13N/A29.6TM80379View
Sequence
>NAU_TM80379 ID=NAU_TM80379; Name=NAU_TM80379; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ATATCATAAACCCAATTCTCCAACTTAAGAGATCACTGCCAACTCAACAC
ATCAACAAAA[G/T]GACAAACACTTTTTAAGCATCACTTGCTAAGTTGA
TTGTTATTAAAGTTGCAAAGGTGTT