NAU_TM77261, NAU_TM77261 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM77261
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM77261
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTATCAAAATTTGACACTGTTGTTGAGGATTGAGACTAACTATTTTGTTTTCTCTCGATGA
3' Flanking SequenceCAAATATGAAAATTCAAGCACATTCGAGTATAATCTAGAAATCGAGAAGACTACAAGTGC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:508017..508136 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:56927576..56927695 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr8chromosomeAt_chr8:43522928..43523048 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:438661..438781 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:481507..481626 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:473668..473788 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:474556..474676 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:862624..862744 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:496080..496199 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:469126..469245 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:477875..477994 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:482213..482332 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:497896..498016 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:495639..495758 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:482438..482557 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:403161..403280 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:334985..335104 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:325688..325807 +Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch26_Dt.12N/A33.2TM77261View
Sequence
>NAU_TM77261 ID=NAU_TM77261; Name=NAU_TM77261; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TATCAAAATTTGACACTGTTGTTGAGGATTGAGACTAACTATTTTGTTTT
CTCTCGATGA[C/T]CAAATATGAAAATTCAAGCACATTCGAGTATAATC
TAGAAATCGAGAAGACTACAAGTGC