UCD_Gh_Gh_Genomic_450030, UCD_Gh_Gh_Genomic_450030 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_Gh_Genomic_450030
AliasUC_Gh_Gh_Genomic_450030
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i49170Gh
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCATCATATTGGCCTGCAAGGAGTTCTTTTGTTTCTTCAAATTCAACTTTA
3' Flanking SequenceTTTTTAGCCCAACAATTACAGTGTCTAGAGTATAGATTAAAGCTGGATTG
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:3573350..3573350 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:386903..387003 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_06chromosomeD10_06:58974943..58975043 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:145520443..145520543 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3917.1supercontigscaffold3917.1:28162..28262 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:174860..174960 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:311657..311757 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:292093..292193 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:292089..292189 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:432745..432845 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:337054..337154 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:416822..416922 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:430053..430153 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:453891..453991 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:420419..420519 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:307368..307468 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr10chromosomechr10:405022..405122 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:327728..327828 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:371625..371725 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10_6020079chromosomeChr10_6020079:2919..3019 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:279450..279550 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr06chromosomeChr06:202999866..202999966 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A106.88SNPi49170GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch25_Dt.06N/A130.85i49170GhView
Sequence
>UCD_Gh_Gh_Genomic_450030 ID=UCD_Gh_Gh_Genomic_450030; Name=UCD_Gh_Gh_Genomic_450030; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
CATCATATTGGCCTGCAAGGAGTTCTTTTGTTTCTTCAAATTCAACTTTA
[A/G]TTTTTAGCCCAACAATTACAGTGTCTAGAGTATAGATTAAAGCTG
GATTG