NAU_TM57055, NAU_TM57055 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM57055
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM57055
TypeSNP
SNP AllelesT/G
5' Flanking SequenceTTCTATGGAACAAAGCTGTGGACCAGATATTTGTGCCGGTAATTGAGTCCATTAGTTCAC
3' Flanking SequenceTCGATGGTAGAAATTTGGAGTAATTTTAAAGTCAACTATTGATGCGTCTATTACTACAAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:8152519..8152639 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:7777034..7777154 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:52767248..52767368 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:59239248..59239368 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:8121432..8121552 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:8588888..8589008 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:8348763..8348883 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:8525533..8525653 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:8385054..8385174 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:8494936..8495056 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:8595606..8595726 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:8477469..8477589 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:8780136..8780256 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:8418024..8418144 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:8646742..8646862 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:7812830..7812950 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:8060970..8061090 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:7481677..7481797 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:7426270..7426390 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:8383360..8383480 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:6161174..6161294 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:7219351..7219471 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch19_Dt.05N/A0TM57055View
Sequence
>NAU_TM57055 ID=NAU_TM57055; Name=NAU_TM57055; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTCTATGGAACAAAGCTGTGGACCAGATATTTGTGCCGGTAATTGAGTCC
ATTAGTTCAC[G/T]TCGATGGTAGAAATTTGGAGTAATTTTAAAGTCAA
CTATTGATGCGTCTATTACTACAAA