NAU_TM56935, NAU_TM56935 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM56935
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM56935
TypeSNP
SNP AllelesG/A
5' Flanking SequenceAGAGTGATAGTAAAACAACAGTAGACCTAATACTTGGAGCCGAAGTGATGGGATTGCCGA
3' Flanking SequenceATTGGCATTGGAGATTCGCAACTGGATGATAAGGAATTGGCAAGATGTAATGTTGAGAGA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:5453295..5453415 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:5208767..5208887 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D05chromosomeD05:5660148..5660268 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:5797999..5798119 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:5600540..5600660 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:5732037..5732157 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:5604143..5604263 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:5671057..5671177 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:5762853..5762973 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:5606830..5606950 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:5924283..5924403 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:5659267..5659387 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:5751145..5751265 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:5243943..5244063 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr09chromosomechr09:5071681..5071801 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:5572126..5572246 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:4258010..4258130 +Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch19_Dt.05N/A24.7TM56935View
2LMY28 x XLZ24, RIL (2018)AD_ch19_Dt.05N/A20.36TM56935View
Sequence
>NAU_TM56935 ID=NAU_TM56935; Name=NAU_TM56935; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AGAGTGATAGTAAAACAACAGTAGACCTAATACTTGGAGCCGAAGTGATG
GGATTGCCGA[A/G]ATTGGCATTGGAGATTCGCAACTGGATGATAAGGA
ATTGGCAAGATGTAATGTTGAGAGA