NAU_TM55466, NAU_TM55466 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM55466
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM55466
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTTGTATTGATTGGTTCGAGTCACAATTATAAAAATATATTATTTGCAATTGCGAATTGTT
3' Flanking SequenceGTATTTGTTTTTTTTTATTTCTACACTTTAGATAATTAGATGTATCCACAATTGATTTTT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:2670545..2670666 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:47482392..47482514 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold178.1supercontigscaffold178.1:1068050..1068170 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:2337916..2338036 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:2763857..2763977 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:2850709..2850829 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:2640919..2641039 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:2641420..2641540 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:2644123..2644244 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:2689753..2689875 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:2786608..2786730 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:2803265..2803385 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:2874377..2874499 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:3083508..3083628 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:47914239..47914360 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch22_Dt.04N/A11.9TM55466View
2LMY28 x XLZ24, RIL (2018)AD_ch22_Dt.04N/A0.28TM55466View
Sequence
>NAU_TM55466 ID=NAU_TM55466; Name=NAU_TM55466; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTGTATTGATTGGTTCGAGTCACAATTATAAAAATATATTATTTGCAATT
GCGAATTGTT[A/T]GTATTTGTTTTTTTTTATTTCTACACTTTAGATAA
TTAGATGTATCCACAATTGATTTTT