NAU_TM49534, NAU_TM49534 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM49534
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM49534
TypeSNP
SNP AllelesA/T
5' Flanking SequenceCGTACTGGATAGTATCAGATTTTTGTTTACAAGCACTACTTTGACATTAAGTCTCCTACC
3' Flanking SequenceTTCCCTTGTTTTCTTTTATTTCTTGCAGCAAATGCTAGGTTTACAGCAATCACTTCTATC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:54982228..54982348 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:103028648..103028768 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:49420022..49420142 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:88635420..88635540 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:7563947..7564067 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold39.1supercontigscaffold39.1:2688723..2688843 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:11522565..11522685 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:53542348..53542468 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:89894959..89895079 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:55219347..55219467 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:107418465..107418585 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:56922426..56922546 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:108089809..108089929 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:56629532..56629652 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:105673931..105674051 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:53867852..53867972 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:102570421..102570541 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:55186551..55186671 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:105521297..105521417 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:55895043..55895163 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:105562348..105562468 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:56001950..56002070 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:104148554..104148674 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:57483768..57483888 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:111425120..111425240 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:55504776..55504896 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:101684086..101684206 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:57111735..57111855 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:109149122..109149242 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:112453105..112453223 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:10727304..10727424 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:44810220..44810340 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr02chromosomechr02:40712881..40713001 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:36452579..36452699 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:54263109..54263229 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:37846329..37846449 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:105771733..105771853 +Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch15_Dt.01N/A96.7TM49534View
Sequence
>NAU_TM49534 ID=NAU_TM49534; Name=NAU_TM49534; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CGTACTGGATAGTATCAGATTTTTGTTTACAAGCACTACTTTGACATTAA
GTCTCCTACC[A/T]TTCCCTTGTTTTCTTTTATTTCTTGCAGCAAATGC
TAGGTTTACAGCAATCACTTCTATC