NAU_TM36374, NAU_TM36374 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM36374
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM36374
TypeSNP
SNP AllelesA/C
5' Flanking SequenceTTCATCCAACCCATATAGCAGCAATTTGGTCTACTTGCAATCTATTGTAAACTCGATTAC
3' Flanking SequenceATTTGTTCAATATGTTGCTTCAAATCTTTGAATCTCTTCAGAACATGGGTTTAGGGCTTT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:100047266..100047386 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00016540_CRI-A2_v1.0.a1chromosometig00016540_CRI-A2_v1.0.a1:52208..52328 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:1141446..1141566 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:91759442..91759562 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:105486663..105486783 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:106287503..106287623 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:105613080..105613200 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:100738464..100738584 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:100377754..100377874 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:101933952..101934072 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:101487811..101487931 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:108730354..108730474 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:103466542..103466662 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:108700264..108700384 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:117253320..117253440 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:111655999..111656119 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch10_At.10N/A112.5TM36374View
2LMY28 x XLZ24, RIL (2018)AD_ch10_At.10N/A54.55TM36374View
Sequence
>NAU_TM36374 ID=NAU_TM36374; Name=NAU_TM36374; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTCATCCAACCCATATAGCAGCAATTTGGTCTACTTGCAATCTATTGTAA
ACTCGATTAC[A/C]ATTTGTTCAATATGTTGCTTCAAATCTTTGAATCT
CTTCAGAACATGGGTTTAGGGCTTT