TAMU_Glsp_224350, TAMU_Glsp_224350 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Glsp_224350
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
SpeciesGossypium longicalyx
Publication[view all]
ContactStelly, David M.
CommentSpecific' G. longicalyx SNP markers, which were determined using an alternative version of the TM-1 assembly. class_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:14048015..14048115 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:19925179..19925278 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:13967871..13967971 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:16281287..16281386 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:47589189..47589289 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr3chromosomeAt_chr3:8862171..8862270 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:16611136..16611236 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:14271083..14271183 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:19612062..19612161 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:14795768..14795868 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:20971562..20971660 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:14364006..14364106 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:20211885..20211984 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:14778622..14778722 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:20875239..20875338 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:14297626..14297726 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:20294869..20294968 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:14200094..14200194 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:19781774..19781873 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:13973175..13973275 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:19858639..19858738 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:14673805..14673905 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:20782471..20782570 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:14402839..14402939 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:20378621..20378720 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:14245204..14245304 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:20237706..20237805 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:14963963..14964063 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:21117349..21117448 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:21030332..21030431 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:21916393..21916492 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:13749330..13749430 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:14405333..14405433 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:12306488..12306588 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:11673714..11673814 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:14806513..14806613 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:10173133..10173233 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:8823578..8823678 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:10718786..10718886 +Gossypium lobatum (D7) genome ISU_v1n/a
F06chromosomeF06:18435459..18435558 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:160366916..160367016 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_Glsp_224350 ID=TAMU_Glsp_224350; Name=TAMU_Glsp_224350; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
TTATCCCTTATTTTAGAGTATAAAATAAGTTTTACAACCAAGTTGAATAG
[A/G]CTTTTATAAGCCTACAACCAACCCGAAGATATTTATATTATTAAG
CCAAA