TAMU_Glsp_224305, TAMU_Glsp_224305 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Glsp_224305
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium longicalyx
Publication[view all]
ContactStelly, David M.
CommentSpecific' G. longicalyx SNP markers, which were determined using an alternative version of the TM-1 assembly. class_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:102001060..102001160 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:131432542..131432642 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2904.1supercontigscaffold2904.1:137942..138042 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold736_A03supercontigscaffold736_A03:80082..80182 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:108794085..108794183 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:107553277..107553377 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:105885778..105885878 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:101155542..101155642 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:101150997..101151097 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:103495353..103495453 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:102782903..102783003 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:109929427..109929527 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:103942184..103942284 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:109475556..109475656 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:4105641..4105741 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:4129638..4129738 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:4430100..4430200 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:35006361..35006461 -Gossypium gossypioides (D6) genome ISU_v1n/a
F03chromosomeF03:106676822..106676920 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:5106838..5106938 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_Glsp_224305 ID=TAMU_Glsp_224305; Name=TAMU_Glsp_224305; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
GAATCCCAAAGCTACCAACAATCCCACCATCTTAGCCTAAGCTTATCACT
[A/G]TTCTTCCACCACTTCCCAGCAGCAGCTTGCCTTCCATTCCTTTCA
TGTCT