TAMU_Glsp_224190, TAMU_Glsp_224190 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Glsp_224190
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
SpeciesGossypium longicalyx
Publication[view all]
ContactStelly, David M.
CommentSpecific' G. longicalyx SNP markers, which were determined using an alternative version of the TM-1 assembly. class_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:3819602..3819704 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:7348318..7348418 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:53655865..53655965 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
tig00016096_CRI-A2_v1.0.a1chromosometig00016096_CRI-A2_v1.0.a1:847607..847707 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr8chromosomeDt_chr8:119577..119679 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:39176242..39176342 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:3716620..3716722 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:7493945..7494045 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:3894479..3894581 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:7556692..7556792 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:3848031..3848133 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:7271688..7271788 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:3913529..3913631 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:7592178..7592278 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:3876884..3876986 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:7570031..7570131 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:3789797..3789899 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:7491624..7491724 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:3732139..3732241 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:7290674..7290774 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:3831516..3831618 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:7246585..7246685 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:7701966..7702066 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:3799465..3799567 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:7220356..7220456 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:4047216..4047318 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:7620166..7620266 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:4665679..4665779 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:4716767..4716867 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:3754577..3754678 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:3708749..3708851 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:3486514..3486616 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:4730278..4730379 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:3913278..3913379 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:155938806..155938907 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_Glsp_224190 ID=TAMU_Glsp_224190; Name=TAMU_Glsp_224190; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
CATATTAAACCAAAATCATGTATCTTTACAAATGATTTATATTACAACTG
[A/T]GTCTTATACTTCATCATCTTTGACAAGCAAGATGAATTTCAGGTA
AGTTC