TAMU_Glsp_224060, TAMU_Glsp_224060 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Glsp_224060
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium longicalyx
Publication[view all]
ContactStelly, David M.
CommentSpecific' G. longicalyx SNP markers, which were determined using an alternative version of the TM-1 assembly. class_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:48511910..48512010 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:11140571..11140671 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:44880382..44880482 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:48108525..48108625 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:50949326..50949424 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:49953201..49953301 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:51003909..51004009 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:48802707..48802807 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:47780347..47780447 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:49002669..49002769 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:48881881..48881981 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:51680290..51680390 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:49484220..49484320 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:51025923..51026023 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:95820812..95820911 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:46638037..46638137 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:75043576..75043676 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:46793109..46793209 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:36411380..36411481 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr08chromosomeChr08:48128463..48128563 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:33119989..33120089 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:26129009..26129109 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:32053140..32053240 -Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:79046906..79047007 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:6456538..6456638 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_Glsp_224060 ID=TAMU_Glsp_224060; Name=TAMU_Glsp_224060; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
GGCGTGAGAGTGTACCAGTTGCAAATAAAAAAAATCAGAAAACCAGAGTG
[C/T]TTTATAGATAATCTGGTCATACAAAAAATTATTAGGATTCTAAGA
CAGCG