TAMU_Glsp_224026, TAMU_Glsp_224026 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Glsp_224026
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium longicalyx
Publication[view all]
ContactStelly, David M.
CommentSpecific' G. longicalyx SNP markers, which were determined using an alternative version of the TM-1 assembly. class_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:7583851..7583949 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:8901376..8901475 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:7473709..7473807 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:8971424..8971523 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold120.1supercontigscaffold120.1:220915..221014 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:39809340..39809438 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:7528535..7528633 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:8067058..8067157 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:7842358..7842456 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:9031274..9031373 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:7516896..7516994 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:8548153..8548252 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:7793444..7793542 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:8997030..8997128 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:7647967..7648065 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:9052272..9052371 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:7875585..7875683 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:8859308..8859407 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:7722710..7722808 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:8678307..8678406 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:8674526..8674625 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:8002440..8002538 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:8907905..8908003 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:7841601..7841699 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:8802994..8803093 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:7926142..7926240 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:9067398..9067497 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:9220766..9220866 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:9058363..9058463 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:46103878..46103976 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:7692417..7692515 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:7622278..7622377 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:5369585..5369687 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:6656759..6656858 +Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:8103372..8103470 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>TAMU_Glsp_224026 ID=TAMU_Glsp_224026; Name=TAMU_Glsp_224026; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
TGAGCATGTGCCTGGCACCAGTATGTTTAGTTCTTTTTTTTTTTTCAATG
[A/T]ATTTGGTGGGTCTTCGGAGTCTTCATACCTATTTCTGGATATGCA
TTGGA