TAMU_Glsp_181960, TAMU_Glsp_181960 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Glsp_181960
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium longicalyx
Publication[view all]
ContactStelly, David M.
CommentSpecific' G. longicalyx SNP markers, which were determined using an alternative version of the TM-1 assembly. class_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:17512785..17512885 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:12351759..12351859 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:50091851..50091951 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:110368917..110369017 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:52107266..52107366 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:21692829..21692929 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:10427533..10427633 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:17290619..17290719 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:12304056..12304156 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:17756593..17756693 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:12771107..12771207 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:17429197..17429297 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:12504297..12504397 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:17368167..17368267 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:13001601..13001701 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:18232621..18232721 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:12941429..12941529 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:17738472..17738572 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:12153516..12153616 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:17573838..17573938 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:12720884..12720984 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:17665925..17666025 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:12559775..12559875 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:18234815..18234915 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:12860469..12860569 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:17892362..17892462 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:12689962..12690062 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:18331080..18331180 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:13070581..13070681 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:61086631..61086731 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:18981427..18981527 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:12050184..12050284 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:85198743..85198843 +Gossypium anomalum (B1) genome NSF_v1n/a
chr11chromosomechr11:11139566..11139666 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:9252416..9252516 -Gossypium harknessii (D2-2) genome ISU_v1n/a
E10chromosomeE10:95711771..95711871 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:13875281..13875380 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:139745215..139745315 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_Glsp_181960 ID=TAMU_Glsp_181960; Name=TAMU_Glsp_181960; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
GAGCGGTTGGACCCAGGAGATTGACCTCCGTTCCTCCGTAACCAGATACT
[C/T]TTACACCCATTGATCATATATATGATATATATGTATCTTCTCATA
TTTGC