NAU_TM10887, NAU_TM10887 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM10887
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM10887
TypeSNP
SNP AllelesC/A
5' Flanking SequenceGTTTATTACTAAGAGAGCTTTTCTTATGGTGCCGCCATCCTTCACCTCCATGATTAATTT
3' Flanking SequenceTCTGTTTTGTATTTGGATATTTTTGCATCTCTTTCCTCTGTTTCCAAGGTCTTTGTAGAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:21579397..21579517 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:22068959..22069079 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:39118753..39118873 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:19900705..19900825 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:22113124..22113244 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:21473554..21473674 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:22144569..22144689 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:22309296..22309416 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:21248213..21248333 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:21941625..21941745 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:21728858..21728978 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:22079795..22079915 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:21471347..21471467 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:22484201..22484321 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:21981383..21981503 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:64363598..64363718 -Gossypium anomalum (B1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch05_At.05N/A76.5TM10887View
2LMY28 x XLZ24, RIL (2018)AD_ch05_At.05N/A70.84TM10887View
Sequence
>NAU_TM10887 ID=NAU_TM10887; Name=NAU_TM10887; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GTTTATTACTAAGAGAGCTTTTCTTATGGTGCCGCCATCCTTCACCTCCA
TGATTAATTT[A/C]TCTGTTTTGTATTTGGATATTTTTGCATCTCTTTC
CTCTGTTTCCAAGGTCTTTGTAGAA