TAMU_GH_TBb004H08f550, TAMU_GH_TBb004H08f550 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb004H08f550
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i23370Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02chromosomeChr02:57663538..57663538 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D01chromosomeD01:59134531..59134631 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:57840412..57840512 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_01chromosomeD10_01:5040511..5040611 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:9399940..9400040 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:56436063..56436163 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:58100521..58100621 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:59725520..59725620 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:59513422..59513522 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:56749840..56749940 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:58063052..58063152 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:58696633..58696733 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:58821419..58821519 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:60122088..60122188 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:58170387..58170486 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:59999836..59999936 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:47280489..47280589 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:56046346..56046444 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:42815626..42815726 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:38100442..38100542 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:56897694..56897795 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:41187944..41188042 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:32646763..32646863 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:39761542..39761642 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:109525276..109525374 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:93049484..93049585 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch15_Dt.01N/A43.31i23370GhView
2DS-28 x SBYF-425, RIL (2022)AD_ch14_Dt.02N/A46.44i23370GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch15_Dt.01N/A30.42i23370GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch15_Dt.01N/A51.4i23370GhView
Sequence
>TAMU_GH_TBb004H08f550 ID=TAMU_GH_TBb004H08f550; Name=TAMU_GH_TBb004H08f550; organism=Gossypium sp.; type=genetic_marker; length=105bp
TATATAATTAATTCATGTGTTTTATTTTTATTTTTTTTGGGTGTGTGTGT
[G/T]TGTGTGACACATTTTTGTTCTTCCAAGTTACTGTTTGCTTGGTTT
GATTA