TAMU_GH_TBb003E15f446, TAMU_GH_TBb003E15f446 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb003E15f446
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i23244Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:6096752..6096752 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:6340814..6340914 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_06chromosomeD10_06:53745037..53745137 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:24530030..24530130 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:6133495..6133595 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:6952639..6952739 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6707794..6707894 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:6936527..6936627 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:6457602..6457702 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:6365057..6365157 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:6319399..6319499 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:6942380..6942480 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:6532793..6532893 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:6475116..6475216 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:7003144..7003244 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr10chromosomechr10:5770189..5770289 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:5381478..5381578 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:6821840..6821940 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:4841344..4841442 -Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A66.96SNPi23244GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch25_Dt.06N/A2.24i23244GhView
30-153 x sGK9708, RIL (2017)AD_ch25_Dt.06N/A49.49i23244GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch25_Dt.06N/A74i23244GhView
Sequence
>TAMU_GH_TBb003E15f446 ID=TAMU_GH_TBb003E15f446; Name=TAMU_GH_TBb003E15f446; organism=Gossypium sp.; type=genetic_marker; length=105bp
GATGTGCAAGCTGGAGCAATCGGTAAAAATACTATGGAGGCTCATGTACT
[A/G]AAAGTTGAATTATATTTTGCTCTTGGGCAAATTTAGTCCATTTAC
GTTGG