NAU_TM01020, NAU_TM01020 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM01020
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM01020
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAGTAACTTCTTTCGACATCCTAACGGTGCCTTCGCAACCAAAGCTTAGATACCACTTTCA
3' Flanking SequenceGGGGCTAAAATTTTCATTTTGCATTCCGTGTGGCCTTAGGCGATCCTTTCAATGCAAACA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:19670815..19670935 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:21800189..21800309 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:29204651..29204771 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:20195485..20195605 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:19959697..19959817 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:20057833..20057953 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:20561878..20561998 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:20441194..20441314 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:19818123..19818243 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:19636262..19636382 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:21154812..21154932 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:20274426..20274546 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:19850190..19850310 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:20701227..20701347 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:20822006..20822126 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:22069606..22069726 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A70.53TM1020View
Sequence
>NAU_TM01020 ID=NAU_TM01020; Name=NAU_TM01020; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AGTAACTTCTTTCGACATCCTAACGGTGCCTTCGCAACCAAAGCTTAGAT
ACCACTTTCA[C/T]GGGGCTAAAATTTTCATTTTGCATTCCGTGTGGCC
TTAGGCGATCCTTTCAATGCAAACA