NAU_TM00972, NAU_TM00972 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00972
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00972
TypeSNP
SNP AllelesT/A
5' Flanking SequenceTAGTCTGAACTTGTTGCTATAGTTCTTTTTAAACCCATAGAATATCTTTAGTTTTTAATA
3' Flanking SequenceGTAACAATTAATAGTGGAATTATATTCCATTACTAGATTCTGATGTCCTTATTTCTTATT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:15182939..15183059 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:18852704..18852824 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:20928163..20928283 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:45638108..45638225 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:43000830..43000950 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:14260549..14260669 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:19329458..19329578 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:15685533..15685653 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:19856283..19856403 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:15330483..15330603 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:19250099..19250219 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:15212193..15212313 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:19745625..19745745 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:15579214..15579334 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:20337642..20337762 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:15781272..15781392 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:18999985..19000105 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:15541175..15541295 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:18819643..18819763 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:20325199..20325319 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:16298216..16298336 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:19428580..19428700 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:15572095..15572215 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:19031647..19031767 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:15930545..15930665 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:19869326..19869446 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:19966017..19966137 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:21197364..21197484 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:21319194..21319314 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:15456092..15456212 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:13566512..13566632 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:11790455..11790572 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:14504711..14504831 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:13175361..13175481 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:23008193..23008313 +Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A70.08TM972View
Sequence
>NAU_TM00972 ID=NAU_TM00972; Name=NAU_TM00972; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TAGTCTGAACTTGTTGCTATAGTTCTTTTTAAACCCATAGAATATCTTTA
GTTTTTAATA[A/T]GTAACAATTAATAGTGGAATTATATTCCATTACTA
GATTCTGATGTCCTTATTTCTTATT