NAU_TM00588, NAU_TM00588 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00588
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00588
TypeSNP
SNP AllelesC/A
5' Flanking SequenceTTCCATTGATTACAGAATTATATCTATCTTTCAAATCCTGGATTTGTCTCTATATATGTC
3' Flanking SequenceATATCTGGATCTCTTATCCAAAAGGCTGACAAAGGTATCATTAAGTGCATATATTTGAAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:10161888..10162008 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:11663775..11663895 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:14418823..14418943 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:10556865..10556985 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:9899812..9899932 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:10351033..10351153 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:9848839..9848959 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:10473413..10473533 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:10294291..10294411 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:10246735..10246855 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9857648..9857768 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:11286904..11287024 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:10555123..10555243 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:10439638..10439758 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:10485272..10485392 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10557571..10557691 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:11504826..11504946 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:10851975..10852095 +Gossypium anomalum (B1) genome NSF_v1n/a
E01chromosomeE01:12533222..12533342 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr01chromosomeChr01:182374561..182374682 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A57.3TM588View
2LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A43.07TM588View
Sequence
>NAU_TM00588 ID=NAU_TM00588; Name=NAU_TM00588; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTCCATTGATTACAGAATTATATCTATCTTTCAAATCCTGGATTTGTCTC
TATATATGTC[A/C]ATATCTGGATCTCTTATCCAAAAGGCTGACAAAGG
TATCATTAAGTGCATATATTTGAAA