NAU_TM00559, NAU_TM00559 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00559
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00559
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGCCGAAGTAAGTTGGTATCTAGTACCTCATCGAATTTATCCAAAGTAATAGTTTGACACC
3' Flanking SequenceAGTGTCTTATCGACTCGTGGTCGAAGTATCCCTGAACACTTCCAATCCTATGGCATGCCA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:9989066..9989186 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:11484725..11484845 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:10383032..10383152 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:9721682..9721802 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:10176452..10176572 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:9675722..9675842 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:10298725..10298845 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:10119577..10119697 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:10073935..10074055 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9690528..9690648 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:11110512..11110632 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:10384814..10384934 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:10266786..10266906 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:10310641..10310761 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10389218..10389338 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:11325746..11325866 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>NAU_TM00559 ID=NAU_TM00559; Name=NAU_TM00559; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GCCGAAGTAAGTTGGTATCTAGTACCTCATCGAATTTATCCAAAGTAATA
GTTTGACACC[C/T]AGTGTCTTATCGACTCGTGGTCGAAGTATCCCTGA
ACACTTCCAATCCTATGGCATGCCA