NAU_TM00557, NAU_TM00557 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00557
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00557
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGTTTACCATTTTGGAGGGACATGAAAGGAAAATATCACCCCAAATACTAGGATGATAGTT
3' Flanking SequenceACGGAGCGACGATTGACGTTGGACATGGAAGACATTTCTCTACCTAGTAATTGAGTTTGA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:9979428..9979548 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:8067623..8067743 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_01chromosomeD5_01:8139696..8139816 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:11466040..11466160 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:52246287..52246407 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:52214868..52214988 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:52192093..52192213 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:1125267..1125387 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016614.1chromosomeCM016614.1:13692821..13692941 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2787.1supercontigscaffold2787.1:108914..109034 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:10373386..10373506 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3724_D01supercontigscaffold3724_D01:3482..3602 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:9712031..9712151 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:9016962..9017082 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:10166813..10166933 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:8776323..8776443 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:9666077..9666197 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:8478070..8478190 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:10289081..10289201 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:8880443..8880563 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:10109932..10110052 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:10064297..10064417 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9680890..9681010 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:11100813..11100933 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:9531011..9531131 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:10375174..10375294 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:8857487..8857607 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:10257148..10257268 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:9160515..9160635 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:10300996..10301116 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10380653..10380773 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:11307015..11307135 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:8060554..8060674 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:10624862..10624982 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:8673315..8673435 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:8604159..8604279 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:8193893..8194013 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:7543244..7543364 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:8732977..8733097 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02_5125281chromosomeChr02_5125281:727..847 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:6482245..6482365 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:8568388..8568508 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:12300404..12300524 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:8775967..8776087 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:182906430..182906550 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A37.41TM557View
Sequence
>NAU_TM00557 ID=NAU_TM00557; Name=NAU_TM00557; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GTTTACCATTTTGGAGGGACATGAAAGGAAAATATCACCCCAAATACTAG
GATGATAGTT[A/G]ACGGAGCGACGATTGACGTTGGACATGGAAGACAT
TTCTCTACCTAGTAATTGAGTTTGA