NAU_TM00517, NAU_TM00517 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00517
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00517
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGTCCCAATTCTACTAAAATTAGAAGGCAAAAACATGTCAAATGGGCATATTAACGCAAC
3' Flanking SequenceCAATTTCATTTAAGTTGTTTTAAATTTTTTTTGCAGGTTAAAGGGAGAAAGAAGAGGCAG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:9577832..9577953 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:10921833..10921954 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:9865556..9865676 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:9197552..9197672 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:9627497..9627616 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:9187982..9188102 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:9768927..9769047 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:9596627..9596747 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:9615184..9615305 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9245919..9246040 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:10590177..10590298 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:9841256..9841377 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:9785300..9785421 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:9779816..9779936 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:9864312..9864433 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:10762352..10762473 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>NAU_TM00517 ID=NAU_TM00517; Name=NAU_TM00517; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TGTCCCAATTCTACTAAAATTAGAAGGCAAAAACATGTCAAATGGGCATA
TTAACGCAAC[C/T]CAATTTCATTTAAGTTGTTTTAAATTTTTTTTGCA
GGTTAAAGGGAGAAAGAAGAGGCAG