NAU_TM00500, NAU_TM00500 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00500
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00500
TypeSNP
SNP AllelesG/T
5' Flanking SequenceCACTTTTTATGCTATTACAAGTGGTTGCCTTTTTTAGGGACCCTTATGTAAATGGCTGTG
3' Flanking SequenceGGAGCTTTTGTAAGACCAAACCGATAGAGATGTCCACCAATTTCCCTACTTAAAAATACC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:9482447..9482567 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:10803995..10804115 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:9762804..9762924 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr3chromosomeAt_chr3:49434332..49434452 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:9094871..9094991 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:9524828..9524948 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:9091442..9091562 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:7950246..7950366 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:9666126..9666246 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:9493858..9493978 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:9519734..9519854 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9152217..9152337 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:8181601..8181721 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:10487649..10487769 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:8980803..8980923 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:9744544..9744664 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:8348444..8348564 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:9682460..9682580 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:9677048..9677168 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:9761507..9761627 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:10644485..10644605 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:9878353..9878473 +Gossypium anomalum (B1) genome NSF_v1n/a
chr02chromosomechr02:7800690..7800810 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:8282063..8282183 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:6212297..6212417 +Gossypium gossypioides (D6) genome ISU_v1n/a
E01chromosomeE01:11553688..11553808 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>NAU_TM00500 ID=NAU_TM00500; Name=NAU_TM00500; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CACTTTTTATGCTATTACAAGTGGTTGCCTTTTTTAGGGACCCTTATGTA
AATGGCTGTG[G/T]GGAGCTTTTGTAAGACCAAACCGATAGAGATGTCC
ACCAATTTCCCTACTTAAAAATACC