NAU_TM00499, NAU_TM00499 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00499
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00499
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGAGAAGCAAAATCCAAGGGTTTCAAGGGTGGATTGGTTGTGTATGGGGTCGTGAAGTCCA
3' Flanking SequenceATGAGTGGCCCACACACTCTTGTGGTTTGGGCTAGGTTAGGTTTTGCCTCAATTTTCTCA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:9474293..9474413 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:10795835..10795955 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:9754651..9754771 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:9086718..9086838 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:9516693..9516813 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:9085389..9085509 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:9657976..9658096 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:9485706..9485826 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:9511583..9511703 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9144255..9144375 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:10479497..10479617 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:9736386..9736506 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:9674299..9674419 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:9668966..9669086 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:9753347..9753467 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:10636328..10636448 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A35.48TM499View
Sequence
>NAU_TM00499 ID=NAU_TM00499; Name=NAU_TM00499; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GAGAAGCAAAATCCAAGGGTTTCAAGGGTGGATTGGTTGTGTATGGGGTC
GTGAAGTCCA[C/T]ATGAGTGGCCCACACACTCTTGTGGTTTGGGCTAG
GTTAGGTTTTGCCTCAATTTTCTCA