NAU_TM00439, NAU_TM00439 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00439
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00439
TypeSNP
SNP AllelesG/T
5' Flanking SequenceATTCCAAGAGTCGGTACGTGGGAATTTGGTACCAGAAAGTATCAACTGGGACTGCTGTAT
3' Flanking SequenceGGTTGCCAATAGGGAAGCTTCAGTTTCTGATGCTTCAGGAGTTCTAAGCATCAATGACAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:9044781..9044901 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:10358442..10358562 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:11964684..11964804 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:9336312..9336432 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:8672508..8672628 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:9099855..9099975 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:8682413..8682533 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:9240832..9240952 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:9068469..9068589 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:9082364..9082484 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:8715200..8715320 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:10065550..10065670 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:9323558..9323678 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:9238138..9238258 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:9251735..9251855 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10192516..10192636 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:9526274..9526393 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:7922611..7922731 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:8107638..8107758 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>NAU_TM00439 ID=NAU_TM00439; Name=NAU_TM00439; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ATTCCAAGAGTCGGTACGTGGGAATTTGGTACCAGAAAGTATCAACTGGG
ACTGCTGTAT[G/T]GGTTGCCAATAGGGAAGCTTCAGTTTCTGATGCTT
CAGGAGTTCTAAGCATCAATGACAA