NAU_TM00417, NAU_TM00417 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00417
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00417
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAACCACTTGATTTTCAGCATCATCTTCCTCTTCCCCTCCTTCTCCTTCATCATCATCGTC
3' Flanking SequenceTCATAATCTTCTTCTTCATCCTCATACTCTCCCTCCGATGACTCCTCCTGCTCCGTCGTC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:8866647..8866767 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:7265465..7265585 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:10147978..10148098 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:11262297..11262417 +Gossypium australe (G2) genome CRI_v1.1n/a
A01chromosomeA01:8466735..8466855 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:8871012..8871132 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:8490117..8490237 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:9027011..9027131 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:8840208..8840328 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:8904234..8904354 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:8537298..8537418 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:9886872..9886992 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:9126011..9126131 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:9065957..9066077 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:9037894..9038014 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:9124176..9124296 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:9981957..9982077 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:7253786..7253906 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:8906842..8906962 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:6048402..6048522 +Gossypium gossypioides (D6) genome ISU_v1n/a
E01chromosomeE01:10616293..10616413 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr01chromosomeChr01:187580984..187581103 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>NAU_TM00417 ID=NAU_TM00417; Name=NAU_TM00417; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AACCACTTGATTTTCAGCATCATCTTCCTCTTCCCCTCCTTCTCCTTCAT
CATCATCGTC[A/G]TCATAATCTTCTTCTTCATCCTCATACTCTCCCTC
CGATGACTCCTCCTGCTCCGTCGTC