NAU_TM00401, NAU_TM00401 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00401
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00401
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCAATGGCGTTTTAGTCCACATAACAAACTTTAATGCAAAAATGTCAATTGAATTAGGTCA
3' Flanking SequenceTGGTCGACGACAAATCCTAAGCCTCTAAATAGATAGCTCTAAACATTTTATAGACAGTTT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:8351255..8351375 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:9567088..9567208 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A01chromosomeA01:7961336..7961456 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:8364282..8364402 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:8025001..8025121 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:8519892..8520012 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:8332923..8333043 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:8388913..8389033 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:8046368..8046488 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:9370564..9370684 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:8541322..8541442 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:8546354..8546474 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:8528780..8528900 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:8504984..8505104 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:9377302..9377422 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>NAU_TM00401 ID=NAU_TM00401; Name=NAU_TM00401; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CAATGGCGTTTTAGTCCACATAACAAACTTTAATGCAAAAATGTCAATTG
AATTAGGTCA[A/C]TGGTCGACGACAAATCCTAAGCCTCTAAATAGATA
GCTCTAAACATTTTATAGACAGTTT