NAU_TM00399, NAU_TM00399 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00399
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00399
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTGTCGAATCTACAAGAAAAACAACGCGAATAGACCTCTGGAACATGATAAAGATGACTCC
3' Flanking SequenceTGGACGACATGCTTGGTACTGTACCACCTTCAATATCAATCAGTAGCCAACATAATCCAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:8344039..8344159 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:9559805..9559925 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A01chromosomeA01:7954099..7954219 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:8357046..8357166 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:8018122..8018242 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:8512655..8512775 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:8325686..8325806 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:8381697..8381817 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:8039152..8039272 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:9363357..9363477 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:8534126..8534246 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:8539139..8539259 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:8521543..8521663 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:8497746..8497866 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:9370016..9370136 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:8719885..8720005 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:7260432..7260552 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:7475185..7475305 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:5725415..5725535 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:7527153..7527273 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:10004285..10004405 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:7417412..7417532 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>NAU_TM00399 ID=NAU_TM00399; Name=NAU_TM00399; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TGTCGAATCTACAAGAAAAACAACGCGAATAGACCTCTGGAACATGATAA
AGATGACTCC[A/G]TGGACGACATGCTTGGTACTGTACCACCTTCAATA
TCAATCAGTAGCCAACATAATCCAA