NAU_TM00340, NAU_TM00340 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00340
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00340
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTATCATGTGACATCGCCAGATTCGGCCATAATGTCTAGGCCAGGTTTGGGGTGTTACAGG
3' Flanking SequenceCTGGCGTATTTGTAGTATAGTGTAATGCGGTAATTCGCTGTACAAATACTTTACAGTTTA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:7007086..7007206 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:7990502..7990622 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:7022029..7022149 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:6576326..6576446 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:7066829..7066949 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:6704614..6704734 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:7056328..7056448 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:7003552..7003672 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:6970321..6970441 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:6699227..6699347 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:7971089..7971209 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:7052395..7052515 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:7108209..7108329 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:7028401..7028521 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:7072018..7072138 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:7806474..7806594 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A19.38TM340View
Sequence
>NAU_TM00340 ID=NAU_TM00340; Name=NAU_TM00340; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TATCATGTGACATCGCCAGATTCGGCCATAATGTCTAGGCCAGGTTTGGG
GTGTTACAGG[A/G]CTGGCGTATTTGTAGTATAGTGTAATGCGGTAATT
CGCTGTACAAATACTTTACAGTTTA