TAMU_GH_TBb002I22r135, TAMU_GH_TBb002I22r135 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb002I22r135
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i23159Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:90089807..90089907 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:88328549..88328649 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:116672773..116672873 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:36420742..36420842 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:82857600..82857700 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:94415173..94415273 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:93610968..93611068 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:91517703..91517803 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:86798918..86799018 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:87423704..87423804 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:89725753..89725853 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:89562921..89563021 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:95856325..95856425 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:89688007..89688107 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:94989390..94989490 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:19187605..19187705 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A67.44SNPi23159GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch09_At.09N/A31.82i23159GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch09_At.09N/A31.82i23159GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A68.57i23159GhView
5Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A59.9i23159GhView
Sequence
>TAMU_GH_TBb002I22r135 ID=TAMU_GH_TBb002I22r135; Name=TAMU_GH_TBb002I22r135; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTACAACGAAAAAAGATTATATTTGGAGAAATCTGAATCTAATAAAGATG
[C/T]GTTCGTTAAAATTCGGTAAAAATACCAAGATTTAAGTAGTTTGAT
TGCAA