NAU_TM00296, NAU_TM00296 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00296
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00296
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAACTAGGTACCAATTTTGGGCGTATCGAGGATGCTAATCCTTCCTCGTGCGTAACCGACT
3' Flanking SequenceCCGAACTCGTTCTCTGATTTTTCGCAGACCAAAAAAATTATCGTTTTAGTAAATCTTGAC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At_chr2chromosomeAt_chr2:5988301..5988421 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:5998556..5998676 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:5804771..5804891 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:5794433..5794553 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:6358092..6358212 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:6347776..6347896 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:6032909..6033029 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:6022571..6022691 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:6346805..6346925 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:6336468..6336588 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:6293908..6294028 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:6283570..6283690 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:6289253..6289373 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:6051948..6052068 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:6041597..6041717 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:7276802..7276922 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:7266479..7266599 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:6354430..6354550 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:6440234..6440354 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:6318769..6318889 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:6308417..6308537 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Sequence
>NAU_TM00296 ID=NAU_TM00296; Name=NAU_TM00296; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AACTAGGTACCAATTTTGGGCGTATCGAGGATGCTAATCCTTCCTCGTGC
GTAACCGACT[C/T]CCGAACTCGTTCTCTGATTTTTCGCAGACCAAAAA
AATTATCGTTTTAGTAAATCTTGAC