NAU_TM00239, NAU_TM00239 (genetic_marker) Gossypium hirsutum

Marker Overview

Name

NAU_TM00239

dbSNP ID

N/A

SNP Array ID

NAU_CottonSNP80K:

NAU_TM00239

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

ATGCTATAGAATGTTCCTTCCGATCCATTGAATTTGTCAATGCCACATTCGTCGCTGAGG

3' Flanking Sequence

AAATAGAATTCCTGCGCCTAAACTGTCAAGAAATACCAGGATGGGTATCAAGATGGCTGT

Species

Gossypium hirsutum

Publication

[view all]

Contact

Guo, Wang-Zhen

Contact

Name

Details

Guo, Wang-Zhen

First name:	Wang-Zhen
Last name:	Guo
Institution:	Nanjing Agri Univ
Address:	Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:	China
Email:	moelab@njau.edu.cn
Phone:	+086 25 84395311
Fax:	+086 25 84395307
Keywords:	Cotton Genomics
Last update:	20-Sep-2011

Libraries


Library Name	Type
NAU_CottonSNP80K	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018202.1	chromosome	CM018202.1:5034030..5034150 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
scaffold1094.1	supercontig	scaffold1094.1:568447..568567 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A01	chromosome	A01:4664944..4665064 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A01	chromosome	Ghir_A01:5130995..5131115 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A01	chromosome	A01:4872286..4872406 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A01	chromosome	A01:5131688..5131808 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A01	chromosome	A01:5078667..5078787 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A01	chromosome	Gbar_A01:4976115..4976235 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A01	chromosome	A01:4914119..4914239 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017636.1	chromosome	CM017636.1:5079508..5079628 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017688.1	chromosome	CM017688.1:5065265..5065385 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A01	chromosome	A01:5109140..5109260 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2017	Cai C., Zhu G., Zhang T., Guo W. High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis BMC Genomics 2017 18:654

Sequence

>NAU_TM00239 ID=NAU_TM00239; Name=NAU_TM00239; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ATGCTATAGAATGTTCCTTCCGATCCATTGAATTTGTCAATGCCACATTC
GTCGCTGAGG[A/G]AAATAGAATTCCTGCGCCTAAACTGTCAAGAAATA
CCAGGATGGGTATCAAGATGGCTGT

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NAU_TM00239, NAU_TM00239 (genetic_marker) Gossypium hirsutum