NAU_TM00218, NAU_TM00218 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00218
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00218
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTAGAATCTAAATATGGAAAACAAAATAGAAGTTAGATCCTCTAGATATCACCGCTTGAGT
3' Flanking SequenceCCTATACACCAGCTCCATAAAGTCTTTCTTGAGTTCAAAATGTGTTTAAAAGATCCCAAG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:4653536..4653656 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:5178370..5178490 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:5674957..5675077 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2385.1supercontigscaffold2385.1:177847..177967 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:4348791..4348911 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:4818809..4818929 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:4575187..4575307 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:4819203..4819323 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:4766105..4766225 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:4596736..4596856 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold25250_obj_A01supercontigscaffold25250_obj_A01:482..602 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:5191262..5191382 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:4615842..4615962 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:5423494..5423614 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:4690917..4691037 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:4796583..4796703 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:4874322..4874442 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:5152915..5153035 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>NAU_TM00218 ID=NAU_TM00218; Name=NAU_TM00218; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TAGAATCTAAATATGGAAAACAAAATAGAAGTTAGATCCTCTAGATATCA
CCGCTTGAGT[A/G]CCTATACACCAGCTCCATAAAGTCTTTCTTGAGTT
CAAAATGTGTTTAAAAGATCCCAAG