NAU_TM00162, NAU_TM00162 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00162
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00162
TypeSNP
SNP AllelesA/T
5' Flanking SequenceCCCACACGGGCGTGTCCCTATCCACACGGGCGTGTGGCCCTGTTTCATGATAATTTTTTT
3' Flanking SequenceAAAATTTTCTAAAAGCTCTGAAAGTTCTTAGTTTGGTCCCGATCTATCTCCAACATATAT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:4076384..4076504 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:4384316..4384437 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold878.1supercontigscaffold878.1:163018..163138 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:3684442..3684562 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:4184405..4184525 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:3999382..3999502 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:4179176..4179296 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:4129569..4129689 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:4063932..4064052 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:4038148..4038268 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:4652470..4652590 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:4027758..4027878 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:4131335..4131455 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:4178658..4178778 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:4358517..4358638 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>NAU_TM00162 ID=NAU_TM00162; Name=NAU_TM00162; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CCCACACGGGCGTGTCCCTATCCACACGGGCGTGTGGCCCTGTTTCATGA
TAATTTTTTT[A/T]AAAATTTTCTAAAAGCTCTGAAAGTTCTTAGTTTG
GTCCCGATCTATCTCCAACATATAT