NAU_TM00116, NAU_TM00116 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00116
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00116
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAACCCATAACAAACAAAAAAAACCAACCCTAGAAACCCTAATGCTAGCCGCCCCTATGGT
3' Flanking SequenceTGTCACCACCACCTGCCACCACCCTTCTGACACCTCTGACGCCGTCTCAGCACCGCCCCA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:3053343..3053464 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:3141642..3141762 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold732.1supercontigscaffold732.1:226954..227074 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:2752425..2752545 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:3327860..3327980 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:3183282..3183402 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:3323142..3323262 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:3275327..3275447 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:3042725..3042846 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:3042589..3042710 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:3586487..3586608 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:3064376..3064497 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:3071790..3071911 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:3320805..3320925 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:3050695..3050815 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A24.8TM116View
Sequence
>NAU_TM00116 ID=NAU_TM00116; Name=NAU_TM00116; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AACCCATAACAAACAAAAAAAACCAACCCTAGAAACCCTAATGCTAGCCG
CCCCTATGGT[C/T]TGTCACCACCACCTGCCACCACCCTTCTGACACCT
CTGACGCCGTCTCAGCACCGCCCCA