NAU_TM00066, NAU_TM00066 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00066
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00066
TypeSNP
SNP AllelesC/T
5' Flanking SequenceTTGAAATTGGTGGCTACAAGTGGTATGGGGAATGATATTATTGGCTGTTATTTTCTAATT
3' Flanking SequenceGATTTCTCAAATTCATCATTGTCATTCTGGGATTCTTTCATAGCTTATTGAAACAATCAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:2028855..2028975 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2014587..2014707 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A01chromosomeA01:1778265..1778385 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:2292235..2292355 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:2214628..2214748 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:2328422..2328542 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:2280194..2280314 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:2000230..2000350 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:2018220..2018340 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:2560293..2560413 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:2057210..2057330 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:2080966..2081086 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:2325733..2325853 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:2027539..2027659 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:1947649..1947769 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F11chromosomeF11:92292068..92292188 +Gossypium longicalyx (F1) genome NSF_v1n/a
F05chromosomeF05:22793621..22793741 +Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:9964706..9964826 -Gossypium longicalyx (F1) genome NSF_v1n/a
F11chromosomeF11:89665997..89666117 -Gossypium longicalyx (F1) genome NSF_v1n/a
F02chromosomeF02:6025421..6025541 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>NAU_TM00066 ID=NAU_TM00066; Name=NAU_TM00066; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTGAAATTGGTGGCTACAAGTGGTATGGGGAATGATATTATTGGCTGTTA
TTTTCTAATT[C/T]GATTTCTCAAATTCATCATTGTCATTCTGGGATTC
TTTCATAGCTTATTGAAACAATCAA