NAU_TM00052, NAU_TM00052 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00052
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00052
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAACTCCAGCAACATCATCAAATGTTACACCGGTGTTGGGTTCCATTTGAAACTTTGCTTT
3' Flanking SequenceGATTGACCAAAAGCAAGGGGAAAACCAGGCCCACCCGGACCTCCCATTCCACCAGAGGAT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:1893247..1893367 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1886067..1886187 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A01chromosomeA01:1645834..1645954 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:2158905..2159025 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:2087632..2087752 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:2197148..2197268 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:2148892..2149012 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:1864802..1864922 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:1886383..1886503 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:2422529..2422649 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:1922729..1922849 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:1950038..1950158 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:2194437..2194557 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:1901461..1901581 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:1819106..1819226 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:1979378..1979498 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02_6325532chromosomeChr02_6325532:4059..4179 +Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:1681222..1681342 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>NAU_TM00052 ID=NAU_TM00052; Name=NAU_TM00052; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AACTCCAGCAACATCATCAAATGTTACACCGGTGTTGGGTTCCATTTGAA
ACTTTGCTTT[C/T]GATTGACCAAAAGCAAGGGGAAAACCAGGCCCACC
CGGACCTCCCATTCCACCAGAGGAT