NAU_TM00042, NAU_TM00042 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00042
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00042
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGACTGACTGTCCTTTTGCTCATCCAGGTGAAAAAGCCCGCCGTCGTGACCCTACTCGGTA
3' Flanking SequenceCAATACTCCTCCACCATCTGTTCTGACTTCCGCCGGGGCGGTGGTTGTCCTCGCGGCGAT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:1558775..1558895 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1556757..1556877 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:2127190..2127310 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:83565430..83565550 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:1247074..1247194 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:1786109..1786229 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:1743216..1743336 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:1809517..1809637 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:1774912..1775032 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:1553748..1553868 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:1551699..1551819 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:1788899..1789019 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:1594559..1594679 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:1596181..1596301 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:1808010..1808130 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:1559082..1559202 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:1489776..1489896 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:1604356..1604476 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:1130160..1130280 +Gossypium gossypioides (D6) genome ISU_v1n/a
E01chromosomeE01:1729574..1729694 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:1353834..1353954 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>NAU_TM00042 ID=NAU_TM00042; Name=NAU_TM00042; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GACTGACTGTCCTTTTGCTCATCCAGGTGAAAAAGCCCGCCGTCGTGACC
CTACTCGGTA[C/T]CAATACTCCTCCACCATCTGTTCTGACTTCCGCCG
GGGCGGTGGTTGTCCTCGCGGCGAT