TAMU_Gl_004492, TAMU_Gl_004492 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Gl_004492
AliasGl_004492_Class_III
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceATTTGTGAACAATTTGATTTGAGGACGAAATGCCTCTAGCTAATGTGAAT
3' Flanking SequenceCAGCACATAAAACCACATCCCAGAACTAGCCAAATGTTGCCGGAGAGGTG
SpeciesGossypium longicalyx
GermplasmBLC_200908137.04
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:47084492..47084592 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:94691403..94691503 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:43248437..43248537 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:103068065..103068165 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:17732409..17732509 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:36165844..36165944 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:11793692..11793792 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:92710529..92710629 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:46833331..46833431 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:80167279..80167379 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold173777supercontigscaffold173777:66..166 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:49675997..49676097 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:98402404..98402504 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:50598414..50598514 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:101656408..101656508 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:49567963..49568063 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:101180117..101180217 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:46857577..46857677 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:97265683..97265783 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:47026294..47026394 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:95371076..95371176 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:49133703..49133803 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:96622303..96622403 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:48573375..48573475 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:94800397..94800497 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:50380654..50380754 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:104343304..104343404 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:47705555..47705655 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:95572758..95572858 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:50170407..50170507 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:103006735..103006835 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:105457821..105457921 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:107227037..107227137 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:44150689..44150789 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:79614874..79614971 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:45648991..45649091 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:33720008..33720108 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:30483785..30483885 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:48039029..48039129 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:29869794..29869894 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:25090860..25090960 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04_6351087chromosomeChr04_6351087:4738..4838 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:94372334..94372434 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:82758728..82758829 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:46660637..46660737 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
BLC_200908137.04accession
Sequence
>TAMU_Gl_004492 ID=TAMU_Gl_004492; Name=TAMU_Gl_004492; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
ATTTGTGAACAATTTGATTTGAGGACGAAATGCCTCTAGCTAATGTGAAT
[C/T]CAGCACATAAAACCACATCCCAGAACTAGCCAAATGTTGCCGGAG
AGGTG