TAMU_Gl_002400, TAMU_Gl_002400 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Gl_002400
AliasGl_002400_Class_III
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceATGAGAAGGCTTAATTCGAAAGCACAAAACAGCCTTTTTTAAATTTCTTC
3' Flanking SequenceACTATAATAGAGGCTAATGCCTGAATTTTTTATTGAACCCGAGTGAGTGG
SpeciesGossypium longicalyx
GermplasmBLC_200908137.04
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:4936473..4936573 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:4734743..4734842 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:55745277..55745376 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:8560356..8560455 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:64229201..64229301 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:5137601..5137701 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:5281556..5281656 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:5063924..5064024 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:5193401..5193501 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:5086211..5086311 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:5147344..5147444 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:5253622..5253722 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:5106057..5106157 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:5425206..5425306 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:5140780..5140880 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:5227831..5227931 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:4766565..4766664 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:80414427..80414526 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:4889903..4890002 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:4584444..4584543 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:4946982..4947081 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:5075676..5075775 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:4610126..4610225 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:4510235..4510334 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:6227210..6227309 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:4968285..4968384 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
BLC_200908137.04accession
Sequence
>TAMU_Gl_002400 ID=TAMU_Gl_002400; Name=TAMU_Gl_002400; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
ATGAGAAGGCTTAATTCGAAAGCACAAAACAGCCTTTTTTAAATTTCTTC
[C/T]ACTATAATAGAGGCTAATGCCTGAATTTTTTATTGAACCCGAGTG
AGTGG