TAMU_Gl_000812, TAMU_Gl_000812 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Gl_000812
AliasGl_000812_Class_III
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCAATCAAGTCCTAGTAAAATAGTCAAAAAAACTAACCAAGATGCAAGCTA
3' Flanking SequenceATTCATGATTACAAGTTAAACTCAAGCAATTTGAATAGATTTTTCCAGCA
SpeciesGossypium longicalyx
GermplasmBLC_200908137.04
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:110826724..110826824 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:54528164..54528263 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:97115651..97115751 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:134715132..134715232 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3851.1supercontigscaffold3851.1:16563..16663 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:97617896..97617996 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:115290953..115291053 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:115784279..115784379 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:113589722..113589822 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:110387552..110387652 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:113306764..113306864 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:113289252..113289352 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:111817282..111817382 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:119355101..119355201 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:109471962..109472062 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:117246311..117246411 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:120577061..120577161 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:2325173..2325273 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:50331700..50331799 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:59215177..59215277 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:45438402..45438502 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:60072517..60072616 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:43865279..43865378 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:34590379..34590478 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:42380654..42380753 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:114164736..114164837 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:96378233..96378332 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
BLC_200908137.04accession
Sequence
>TAMU_Gl_000812 ID=TAMU_Gl_000812; Name=TAMU_Gl_000812; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
CAATCAAGTCCTAGTAAAATAGTCAAAAAAACTAACCAAGATGCAAGCTA
[C/T]ATTCATGATTACAAGTTAAACTCAAGCAATTTGAATAGATTTTTC
CAGCA