TAMU_GH_TBb086F21f319, TAMU_GH_TBb086F21f319 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTAMU_GH_TBb086F21f319
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
SpeciesGossypium hirsutum
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:46641069..46641169 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:37668436..37668536 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr4chromosomeAt_chr4:48555726..48555826 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold214271supercontigscaffold214271:78..178 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:40419539..40419639 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:40682238..40682338 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:40404862..40404962 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:40594043..40594143 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:36634098..36634198 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:39075550..39075650 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:38078024..38078124 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:38874646..38874746 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:42020954..42021054 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:38452861..38452961 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:41577148..41577248 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:43177996..43178096 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Sequence
>TAMU_GH_TBb086F21f319 ID=TAMU_GH_TBb086F21f319; Name=TAMU_GH_TBb086F21f319; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
AAGGCTTAAGCCGTGTCATCTTCTCGATTTGTCCTGTTTTGTCCCTTTTT
[A/G]GATCACTTTTGGTTCCTTTTGACTCTTGGTGCTCTCCTGAGTACA
AAAAG